SATMD Staphylococcus aureus Transcriptome Meta Database, SAMMD Staphylococcus aureus Microarray Meta Database
SATMD Staphylococcus aureus Transcriptome Meta-Database

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Number of entries in SATMD as of today


Table Number of Records
Regulated Gene List 54332
Experiments 251
References 113
Annotations 15512


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Following plans are only for ACADEMIC/non-profit researchers. Please email us - contact at satmd dot org - for COMMERCIAL payment plan options


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SATRAT: Network Discovery Tool

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Advanced

SATMD search

Core SATMD database

Table output

Core + Updated SATMD database

SATRAT : Network Discovery Tool

Advanced search

Email support

New data email alert

Regulatory Network Integration (coming soon)

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Help

SATMD is being developed and maintained by a small team of PhDs, lead by Dr. Vijay Nagarajan PhD, Program Director at Informatics LLC, MD 20902, USA

Please email us - contact at satmd dot org - for any questions regarding SATMD

 

About SATMD

Search

You can search  satmd using an ORF ID or using a Gene Name or using an ORF Product Name.

Search using an ORF ID

  1. You can search satmd using ORF IDs from S. aureus strains N315 (eg., SA1007) or COL (eg., SACOL2737) or MW2 (eg., MW0848) or Mu50 (eg., SAV1433).
  2. Enter the ORF ID in the given text box. ID could be entered in any case (both sa1007 and SA1007 are valid queries and would return the same results)
  3. Select the ORFID option.
  4. Click the Search button.
  5. sammd maps your ORF ID to N315 ID and returns the expression status of your query ID under different experimental conditions.
  6. Remember to select the option ORF ID before searching.

Search using a Gene Name

  1. You can search sammd using a Gene name from S. aureus like agr or agrA or ure or ureA etc.,
  2. Enter the Gene name in the given text box. Gene name could be entered in any case ( for example, both agr and AGR are valid queries and would return the same results)
  3. Select the GeneName option.
  4. Click the Search button.
  5. sammd lists all the hits that match your query Gene Name.
  6. Click an ORF ID from the results to know its expression status.
  7. Remember to select the option GeneName before searching.

Search using a ORF Product Name or Function

  1. satmd lets you search using the ORF Product name or by function like "accessory gene regulator" or urease or gyrase or "dna polymerase" etc.,
  2. Enter the ORF or Gene product name in the given text box.
  3. Make sure to select the ORFFunction option.
  4. Click the Search button.
  5. For ORFFunction option, users can query satmd using Boolean operators AND, NOT, * and "".

EXAMPLE searches using ORFFunction option

 

Search Term

Result

without any operator

urease gamma subunit

Returns any name that contains 'urease' and 'gamma' or 'subunit',      like;

urease alpha subunit

urease accessory protein, in addition to

urease gamma subunit

 

Without any operators (AND or NOT), 'gamma', 'subunit' becomes optional, in other words, urease gamma subunit returns results similar to urease OR gamma OR subunit

within double quotes ""

"urease gamma subunit"

Returns only

 

urease gamma subunit

with AND operator

urease gamma AND subunit

Returns all names containing both urease AND subunit, like;

 

urease alpha subunit

urease beta subunit

urease gamma subunit

with NOT and AND operator

urease NOT gamma AND subunit

Returns all names containing both urease AND subunit, but NOT gamma, like;

 

urease alpha subunit

urease beta subunit

with * wild card operator

transport*

Returns all names containing words like;

 

transport

transporter

transporting

Advanced Search

Your input for the advanced search, could be in any one of these formats:

N315 orf ids separated by a new line character

SA0107
SA0153
SA0253
SA0271
SA0899
SA0900
SA1007
SA1628
SA1630
SA1631
SA1842
SA1843
SA1844

N315 orf ids separated by a space

SA0107 SA0153 SA0253 SA0271 SA0899 SA0900 SA1007 SA1628 SA1630 SA1631 SA1842 SA1843

N315 orf ids separated by a comma

SA0107,SA0153,SA0253,SA0271,SA0899,SA0900,SA1007,SA1628,SA1630,SA1631,SA1842,SA1843

 

Database Schema

 

Implementation Scheme