SATMD Staphylococcus aureus Transcriptome Meta Database, SAMMD Staphylococcus aureus Microarray Meta Database
SATMD Staphylococcus aureus Transcriptome Meta-Database
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SATMD is the Staphylococcus aureus transcriptome meta-database. SATMD is a meta-database that contains the post-analysis data from all transcriptome experiments done in Staphylococcus aureus. SATMD contains all the genes identified as regulated by either a locus or a growth condition, using microarray and other transcriptome (NGS) technology

 
  • Choose a query type below (ORFID, GeneName or ORFFunction)
  • Enter query in text box (e.g. SA1233 for an ORFID, or sarA for a Gene name, or DNA polymerase for an ORF product name) to search for transcriptomic data
  • The output will show all the genes regulated under growth condition or by the regulator in the query
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      ORFID GeneName ORFFunction  

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    for more HELP and examples of searches using
    ORFID, GeneName, ORFFunction
      ALL
    50583
    6850
    8325-4
    A222231
    ATCC12600
    ATCC25923
    ATCC29213
    ATCC43300
    CF-Marseille
    Clinical_Isolate
    COL
    EMRSA-16
    HG001
    HIP5827
    JH1
    JKD6210
    JP1
    LAC
    MRGR3
    MRSA252
    Mu50
    MW2
    N315
    N315-clonotype
    NCTC_8325
    Newman
    RN27
    RN4220
    RN6390
    RN6390B
    RN6734
    SA113
    SA13011
    SA137/93A
    SA137/93G
    Sanger_252
    SG511
    SH1000
    Strain_923
    UAMS-1
    USA300
    WCUH29

    Select Strains to narrow down your search

    (Uncheck ALL before selecting specific strains)

    Please cite these references if you have used this database or the network tool:
    For Database: Vijayaraj Nagarajan and Mohamed O. Elasri: SAMMD: Staphylococcus aureus Microarray Meta-Database. BMC Genomics 2007, 8:351.
    For Network: Tamilselvi Gopal, Vijayaraj Nagarajan and Mohamed O. Elasri: SATRAT: Staphylococcus aureus transcript regulatory network analysis tool. PeerJ 2015, Jan 6;3:e717